If you were upgrading to a more free flowing manifold then it's natural to see a slight drop in pressure. If you have just changed to an identical unit then a pipe may be loose/leaking slightly.
just fitted a free flow manifold myself and noticed a small decrease in boost pressure by about 2-3psi, after a while one of the gaskets blew, you would no if the gaskets were leaking by the sound coming from under the bonnet..