No they don't.
"The 1JZ-GTE employs twin CT12A turbochargers arranged in parallel and blowing through a side-mount or front mount air-to-air intercooler. With an 8.5:1 static compression ratio, the factory quoted power and torque outputs are 280 metric horsepower (210 kW) at 6200 rpm and 363 newton metres (268 ft·lbf) at 4800 rpm respectively. These motors are over square (86.0mm bore x 71.5mm stroke). Yamaha may have had a hand in the development or production of these motors (possibly the head design), hence the Yamaha badging on certain parts of the motor, such as the cam gear cover. In 1991, the 1JZ-GTE was slotted into the all-new Soarer GT." - From
Wikipedia
The CT12 doesn't bolt straight to the CT9 manifold. The work required to get one to fit doesn't justify the power gained over a CT9 Hybrid and probably won't match that of a TD04 anyway.
If you're a metal fabricator and can do the work for pittence, it might be worth opting for a CT12 just to be a bit different. I wouldn't bother if you had to pay to have someone make it fit.